When it comes to medical devices, precision isn’t a luxury. It’s a requirement. Every small part must meet FDA standards, whether it goes inside the human body or supports surgical tools. That means that machining the FDA inspection becomes a critical checkpoint.
A report by the U.S. FDA in 2023 revealed that almost 38% of medical device recalls were due to manufacturing issues. Many of these were linked to non-conforming parts made through CNC machining. These failures can delay product launches, cost millions in rework, and even result in patient safety risks.
So why do these parts fail? And more importantly, how can those failures be avoided? This blog explores the most common reasons parts fail machining FDA inspection—and how Frigate helps deliver medical parts that pass the first time, every time.
Reasons for Medical Parts Failing in CNC Machining FDA Inspection
Medical parts must follow strict FDA rules. Even the smallest error—like a size off by 0.01 mm—can lead to inspection failure. The machining FDA inspection checks dimensions, surfaces, cleanliness, and the process used to make the part.
Most failures come from technical design, machining, or quality control gaps. These small issues can result in delays, wasted costs, and rejected parts. Below are the key reasons why CNC-machined medical parts often fail inspection.
Engineering Specifications Misaligned with Machining Output
Design intent often exceeds the physical limits of CNC machining setups. Due to poor post-processing or unoptimized G-code, discrepancies between CAD models and the executed tool paths can result in deviations beyond acceptable tolerances. Multi-axis contouring, fine-feature milling, or deep cavity cutting may introduce dimensional drift or step errors, especially if thermal expansion and tool deflection aren’t compensated. Even micron-level deviations (e.g., ±0.01 mm) can compromise functional interfaces in implant-grade assemblies.

Lack of In-Process Quality Assurance
Traditional end-of-line inspection is insufficient for regulatory compliance. Real-time process control is essential to detect anomalies such as tool wear, spindle vibration, or thermal instability during machining. Undetected deviations accumulate without embedded metrology or adaptive feedback mechanisms, rendering entire batches non-compliant. FDA audits scrutinize control methods as much as output, and absence of statistical process control (SPC) or in-situ metrology typically flags a nonconformance.
Surface Contamination and Incomplete Biocompatibility Compliance
Surface condition failures are frequently caused by sub-micron particulates, residual cutting fluids, or mechanical burrs—none of which are always visible to the naked eye. For components intended for human implantation, standards such as ISO 10993-1 and ASTM F86 dictate specific requirements for cytotoxicity, surface passivation, and cleanliness. Improper passivation or insufficient ultrasonic cleaning can leave trace metal ions or particulate matter, elevating the risk of adverse biological response and inspection rejection.
Incomplete Manufacturing Traceability
FDA regulations demand end-to-end traceability, from raw material acquisition through final inspection. Missing documentation—such as raw material certificates, tooling change logs, or machine calibration records—can trigger a failed audit, even if the part is dimensionally correct. Each manufactured unit must be traceable via a unique identifier linked to batch records, tooling data, machine parameters, operator actions, and environmental conditions. Lack of this data chain is a primary reason for regulatory disapproval.
Unvalidated Tooling and Machining Processes
Tool and process validation is mandatory under 21 CFR Part 820.75. Tools and fixtures must undergo Installation Qualification (IQ), Operational Qualification (OQ), and Performance Qualification (PQ) to prove they perform reliably under production conditions. Skipping or inadequately performing these validations leads to variable output and FDA nonconformance. For example, thermal expansion of fixtures or wear-induced tool deviations can lead to non-repeatable tolerances and surface inconsistencies.

Non-Compliant or Unverified Raw Materials
Material inconsistencies are a major risk in globalized supply chains. Incorrect alloy composition, inconsistent grain structure, or inadequate mechanical properties often result from improperly labeled or substituted materials. For FDA-compliant parts—especially implants—traceability to certified heats and verification against ASTM and ISO standards (e.g., ASTM F136 for titanium alloys) is critical. Failure to verify incoming material properties via spectroscopic or mechanical testing leads to regulatory failure.
Human Error in Setup, Fixturing, and Post-Machining Handling
Manual operations introduce variability in tool alignment, part orientation, or handling that can lead to dimensional inaccuracy or contamination. For example, inconsistent torque during fixturing may cause part distortion during clamping. Improper glove use during final cleaning or packaging can introduce particulates or skin oils that compromise sterility. FDA inspections focus heavily on operator training, documented procedures, and controlled environments. High operator involvement without standardized workflows often correlates with inspection failures.
How to Prevent CNC Medical Parts Failure
(and how Frigate delivers medical parts CNC machining with perfection to pass FDA inspection)
FDA inspections are not just about finished products. They focus on how parts are made, what systems are in place, and whether risk is proactively managed. To pass machining FDA inspection, compliance must be designed into every layer of the manufacturing process—machines, materials, methods, and monitoring. The following practices help prevent part failure and ensure inspection readiness.
Embed Real-Time Compliance Through In-Process Monitoring
Most failures start small—tool wear, heat buildup, or spindle load drift. Without real-time feedback, these deviations go undetected until final inspection. By then, it’s too late.
Modern CNC systems must include in-line monitoring sensors that measure tool loads, vibration signatures, spindle torque, and thermal expansion. This data feeds into compliance thresholds set against FDA tolerance bands.
Frigate integrates edge computing with CNC equipment. Machine signals are captured and compared against FDA-mapped control plans. When a measurement approaches the critical limit, alerts are triggered instantly. This feedback loop ensures no process runs out of compliance—resulting in consistent part quality and fewer rejections.
Guarantee Manufacturability Through Design-for-CNC Review
Medical part designs often include complex geometries—tight radii, deep cavities, or thin walls. These features are difficult to machine reliably and can cause chatter, tool deflection, or thermal distortion.
A robust design-for-manufacturing (DFM) process is essential. Models should be reviewed for tool access, feature tolerance stack-up, fixturing limitations, and stress zones.
Frigate assembles cross-functional teams—designers, machinists, QA, and metrologists—to evaluate each model before NC code generation. This team uses CAD interrogation tools and tolerance simulation software to optimize the part geometry for stable CNC machining. Reworks and unexpected failures are avoided before chips are made.
Leverage Digital Twins for Pre-Production Validation
Testing a machining process after setup wastes time and material. Instead, digital twins—virtual models that simulate the entire machining environment—validate operations under real conditions.
Simulations include tool deflection, material removal rate, spindle power curves, coolant flow dynamics, and heat maps. These help foresee surface finish flaws, burr formation, or dimensional warping before physical machining begins.
Frigate develops full digital twins for each project. These include 3D models of workholding fixtures, machine kinematics, and G-code simulations. The digital twin is validated under projected run conditions to ensure the first real cut delivers compliant results—meeting FDA precision and repeatability standards from the start.
Implement PFMEA to Identify and Control Process Risks
Every machining process carries risks—tool breakage, incorrect tool path, fixture misalignment, or coolant contamination. The FDA requires that these risks be identified, ranked, and mitigated.
PFMEA (Process Failure Mode and Effects Analysis) is a structured method for anticipating failure points and mapping control strategies.
Frigate runs PFMEA on every CNC workflow. This includes scoring severity, occurrence, and detection of each potential failure. The results guide the development of control plans, tool change intervals, and inspection checkpoints. It transforms risk from reactive to predictive.

Maintain Compliance Through a Fully Integrated QMS
Documentation gaps are one of the most common reasons for failing machining FDA inspection. A part may be perfect, but it fails if process records, operator training, or revision histories are missing.
A digital QMS (Quality Management System) must be embedded across all operations—controlling everything from tool calibration records to inspection logbooks.
Frigate’s QMS links ERP, MES, and QA systems. Every tool, setup, operator, and inspection event is recorded with timestamps, version control, and electronic signatures. FDA inspectors get end-to-end traceability on every part—without hunting through binders or spreadsheets.
Qualify Equipment and Tools Using IQ/OQ/PQ Protocols
FDA inspections require proof that equipment and processes are qualified to perform consistently. IQ (Installation Qualification), OQ (Operational Qualification), and PQ (Performance Qualification) are the backbone of process validation.
Without proper validation, even a well-machined part may be deemed non-compliant.
Frigate performs IQ by verifying machine specs and utility setups. OQ checks that the CNC runs to required tolerances under defined conditions. PQ demonstrates that the system can repeatedly produce parts within FDA specs under actual production loads. These validations are documented and traceable, forming a ready-to-review compliance package.
Secure Material Integrity Through Verified Supply Chains
A part can be perfectly machined—but if the material isn’t what it claims to be, it fails. FDA regulations require traceable, verified, and biocompatible material inputs, especially for implants and surgical-grade components.
Material mislabeling, contamination, or deviation in chemistry can result in serious non-compliance.
Frigate works only with pre-approved, audited suppliers. Each incoming batch comes with chemical composition reports, RoHS and REACH compliance, and MTRs (Material Test Reports). Materials are re-verified in-house using XRF or spectrometry. This ensures FDA-grade compliance from raw bar stock to final part.
Conclusion
Failure in machining FDA inspection often comes from small things—an unchecked tolerance, a dirty part, or a missing document. But small things lead to big problems. Lost production time. Failed launches. Regulatory fines. Even patient risk.
Avoiding those problems takes discipline. It takes systems that monitor, correct, and prove every detail. Get Instant Quote today to ensure your next medical project passes FDA machining inspection—first time, every time.